Python Site Packages

Site Packages

For each Python version, LC supports a set of modules, also known as site-packages, generally beneficial to our user community. Our package selection process begins when a package is requested by a user. LC first studies if it can generally benefit the Python users on the LC machines before committing to install and maintain it. If it turns out to be too specific to the individual requester, we recommend that this user make a side-installation and add the installation path to their Python module search path via the PYTHONPATH environment variable, or that the user use virtualenv to manage their own Python environment (instructions for both options here). In general, a python installation can be queried for the list of packages by running python -m pip list --format=columns. The information below is for TOSS 3, CORAL EA, and CORAL systems.

TOSS 3 Python Version 2.7.13 Site Packages

The following site packages for Python version 2.7.13 (/usr/tce/packages/python/python-2.7.13/bin/python) on TOSS 3 systems:

[lee218@rzgenie2:~]$ date
Tue Jul 25 15:20:03 PDT 2017
[lee218@rzgenie2:~]$ python-2.7.13 -m pip list --format=columns
Package           Version                             
----------------- --------                            
alabaster         0.7.9                               
astroid           1.4.5                               
Babel             2.3.4                               
basemap           1.0.7                               
biopython         1.65                                
Bottleneck        1.0.0                               
configparser      3.5.0                               
cycler            0.10.0                              
Cython            0.25.2                              
docutils          0.12                                
egenix-mx-base    3.2.8                               
enum34            1.1.6                               
epydoc            3.0.1                               
flake8            3.0.4                               
funcsigs          0.4                                 
gist              2.1.7                               
gnuplot-py        1.8                                 
h5py              2.6.0                               
imagesize         0.7.1                               
ipython           3.1.0                               
Jinja2            2.8                                 
lazy-object-proxy 1.2.2                               
llvmlite          0.18.0                              
logilab-common    1.2.0                               
MarkupSafe        0.23                                
matplotlib        1.5.3                               
mccabe            0.5.2                               
mock              1.3.0                               
mpi4py            2.0.0                               
mpmath            0.19                                
netCDF4           1.2.3.1                             
nose              1.3.7                               
numba             0.33.0                              
numexpr           2.5                                 
numpy             1.11.2                              
pandas            0.18.0                              
pbr               1.8.1                               
periodictable     1.4.1                               
pexpect           3.3                                 
Pillow            3.2.0                               
pip               9.0.1                               
Pmw               2.0.0                               
psutil            5.0.1                               
py                1.4.31                              
pychecker         0.8.19                              
pycodestyle       2.0.0                               
pyflakes          1.2.3                               
Pygments          2.1.3                               
pylint            1.4.3                               
Pypar             2.1.5                               
pyparsing         2.0.3                               
PySide            1.2.2                               
pytest            3.0.2                               
python-dateutil   2.5.2                               
pytz              2016.6.1                            
PyYAML            3.11                                
requests          2.13.0                              
rpy2              2.5.6                               
ScientificPython  2.8.1                               
scikit-learn      0.17.1                              
scipy             0.18.1                              
setuptools        25.2.0                              
singledispatch    3.4.0.3                             
six               1.10.0                              
snowballstemmer   1.2.1                               
Sphinx            1.4.5
sphinx-rtd-theme  0.1.10a0
sympy             1.0
virtualenv        15.0.1
wheel             0.26.0
wrapt             1.10.8

TOSS 3 Python Version 2.7.14 Site Packages

The following site packages for Python version 2.7.14 (/usr/tce/packages/python/python-2.7.14/bin/python) on TOSS 3 systems:

[lee218@rzgenie5:~]$ date                                             
Thu May 10 13:04:54 PDT 2018                                          
[lee218@rzgenie5:~]$ python-2.7.14 -m pip list --format=columns              
Package                            Version                            
---------------------------------- -----------                        
alabaster                          0.7.10                             
appdirs                            1.4.3                              
astroid                            1.4.5                              
Babel                              2.4.0                              
backports.functools-lru-cache      1.4                                
backports.shutil-get-terminal-size 1.0.0                              
basemap                            1.0.7                              
biopython                          1.70                               
Bottleneck                         1.0.0                              
cffi                               1.11.5                             
configparser                       3.5.0                              
cycler                             0.10.0                             
Cython                             0.25.2                             
dask                               0.8.1                              
decorator                          4.0.9                              
docutils                           0.13.1                             
editdistance                       0.4                                
egenix-mx-base                     3.2.8                              
enum34                             1.1.6                              
epydoc                             3.0.1                              
flake8                             3.5.0                              
funcsigs                           0.4                                
functools32                        3.2.3.post2                        
gist                               2.1.7                              
gnuplot-py                         1.8                                
h5py                               2.7.1                              
hypothesis                         3.7.0                              
imagesize                          0.7.1                              
ipython                            5.1.0                              
ipython-genutils                   0.1.0                              
isort                              4.2.15                             
Jinja2                             2.9.6                              
Keras                              2.0.3                              
lazy-object-proxy                  1.3.1                              
lit                                0.5.0                              
llvmlite                           0.20.0                             
MarkupSafe                         1.0                                
matplotlib                         2.0.2                              
mccabe                             0.6.1                              
mpi4py                             3.0.0                              
mpmath                             0.19                               
netCDF4                            1.2.7                              
networkx                           1.11                               
nose                               1.3.7                              
numba                              0.35.0
numexpr                            2.6.1
numpy                              1.13.3
packaging                          16.8
pandas                             0.21.1
pathlib2                           2.1.0
periodictable                      1.4.1
pexpect                            4.2.1
pickleshare                        0.7.4
Pillow                             3.2.0
pip                                9.0.1
pkgconfig                          1.2.2
Pmw                                2.0.0
prompt-toolkit                     1.0.9
psutil                             5.0.1
ptyprocess                         0.5.1
py                                 1.4.33
pychecker                          0.8.19
pycodestyle                        2.3.1
pycparser                          2.17
pydot                              1.2.3
pyflakes                           1.6.0
Pygments                           2.2.0
pylint                             1.6.5
Pypar                              2.1.5
pyparsing                          2.2.0
PySide                             1.2.2
pytest                             3.0.7
python-dateutil                    2.5.2
pytz                               2017.2
PyYAML                             3.11
requests                           2.14.2
rpy2                               2.5.6
ScientificPython                   2.8.1
scikit-image                       0.12.3
scikit-learn                       0.19.1
scipy                              1.0.0
setuptools                         35.0.2
setuptools-scm                     1.15.6
simplegeneric                      0.8.1
singledispatch                     3.4.0.3
six                                1.10.0
snowballstemmer                    1.2.1
Sphinx                             1.6.3
sphinx-rtd-theme                   0.2.5b1
sphinxcontrib-websupport           1.0.1
subprocess32                       3.2.7
sympy                              1.0
tables                             3.3.0
Theano                             0.8.2
toml                               0.9.3
traitlets                          4.3.1
typing                             3.6.1
virtualenv                         15.1.0
wcwidth                            0.1.7
wheel                              0.29.0
wrapt                              1.10.10

TOSS 3 Python Version 2.7.16 Site Packages

The following site packages for Python version 2.7.16 (/usr/tce/packages/python/python-2.7.16/bin/python) on TOSS 3 systems:

[lee218@rzgenie5:~]$ date                                                      
Fri Mar  8 11:45:02 PST 2019                                                   
[lee218@rzgenie5:~]$ python-2.7.16 -m pip list --format=columns                
Package                            Version   
---------------------------------- -----------
alabaster                          0.7.12    
astroid                            2.2.0     
atomicwrites                       1.1.5     
attrs                              18.1.0    
Babel                              2.6.0     
backports.functools-lru-cache      1.5       
backports.shutil-get-terminal-size 1.0.0     
basemap                            1.2.0     
biopython                          1.73      
Bottleneck                         1.2.1     
cffi                               1.12.2    
cloudpickle                        0.5.2     
configparser                       3.5.1     
cycler                             0.10.0    
Cython                             0.29.5    
dask                               1.1.2     
decorator                          4.3.0     
docutils                           0.14      
editdistance                       0.4       
enum34                             1.1.6     
epydoc                             3.0.1     
flake8                             3.7.7     
funcsigs                           1.0.2     
functools32                        3.2.3.post2
gist                               2.1.7     
gnuplot-py                         1.8       
h5py                               2.9.0     
hypothesis                         4.7.2     
imagesize                          1.1.0     
ipython                            5.1.0     
ipython-genutils                   0.2.0     
isort                              4.2.15    
Jinja2                             2.10      
Keras                              2.2.4     
Keras-Applications                 1.0.7     
Keras-Preprocessing                1.0.9     
kiwisolver                         1.0.1     
lazy-object-proxy                  1.3.1     
lit                                0.7.1     
llvmlite                           0.27.1    
locket                             0.2.0     
MarkupSafe                         1.0       
matplotlib                         2.2.3     
mccabe                             0.6.1     
more-itertools                     4.3.0     
mpi4py                             3.0.1     
mpmath                             1.1.0     
netCDF4                            1.4.2     
networkx                           2.2       
nose                               1.3.7     
numba                              0.42.1    
numexpr                            2.6.9     
numpy                              1.16.2    
packaging                          17.1      
pandas                             0.24.1    
partd                              0.3.8     
pathlib2                           2.3.2     
periodictable                      1.5.0     
pexpect                            4.6.0     
pickleshare                        0.7.4     
Pillow                             5.4.1     
pip                                19.0.3    
pkgconfig                          1.4.0     
pluggy                             0.7.1     
Pmw                                2.0.1     
prompt-toolkit                     1.0.9     
psutil                             5.5.1     
ptyprocess                         0.5.1     
py                                 1.5.4     
pychecker                          0.8.19    
pycparser                          2.18      
pydot                              1.4.1     
pyflakes                           2.1.0     
Pygments                           2.3.1     
pylint                             2.3.0     
Pypar                              2.1.5     
pyparsing                          2.3.1     
pyproj                             1.9.6     
pyshp                              2.1.0     
PySide2                            5.12.1    
pytest                             4.3.0     
python-dateutil                    2.5.2     
pytz                               2017.2    
PyWavelets                         0.5.2     
PyYAML                             3.13      
requests                           2.21.0    
rpy2                               2.8.6     
scandir                            1.9.0     
ScientificPython                   2.8.1     
scikit-image                       0.14.2    
scikit-learn                       0.20.2    
scipy                              1.2.1     
setuptools                         40.8.0    
setuptools-scm                     3.1.0     
shiboken2                          5.12.1    
simplegeneric                      0.8.1     
singledispatch                     3.4.0.3   
six                                1.12.0    
snowballstemmer                    1.2.1     
Sphinx                             1.8.4     
sphinx-rtd-theme                   0.4.3     
sphinxcontrib-websupport           1.1.0     
subprocess32                       3.2.7     
sympy                              1.3       
tables                             3.4.4     
Theano                             1.0.4     
toml                               0.10.0    
toolz                              0.9.0     
traitlets                          4.3.1     
typing                             3.6.1     
virtualenv                         16.4.1    
wcwidth                            0.1.7     
wheel                              0.33.1    
wrapt                              1.10.10

TOSS 3 Python Version 3.6.0 Site Packages

The following site packages for Python version 3.6.0 (/usr/tce/packages/python/python-3.6.0/bin/python3) on TOSS 3 systems:

[lee218@rzgenie2:~]$ date
Fri Feb 16 08:09:36 PST 2018                                 
[lee218@rzgenie2:~]$ python3-3.6.0 -m pip list --format=columns
Package           Version                                      
----------------- --------                                     
alabaster         0.7.9                                        
astroid           1.4.5                                        
Babel             2.3.4                                        
basemap           1.0.7                                        
Bottleneck        1.0.0                                        
cycler            0.10.0                                       
Cython            0.25.2                                       
docutils          0.12                                         
epydoc            3.0.1                                        
flake8            3.0.4                                        
gist              2.1.7                                        
h5py              2.6.0                                        
imagesize         0.7.1                                        
ipython           3.1.0                                        
Jinja2            2.8                                          
lazy-object-proxy 1.2.2                                        
logilab-common    1.2.0                                        
MarkupSafe        0.23                                         
matplotlib        1.5.3                                        
mccabe            0.5.2                                        
mock              1.3.0                                        
mpi4py            2.0.0                                        
nose              1.3.7                                        
numexpr           2.5                                          
numpy             1.11.2                                       
pandas            0.18.0                                       
pbr               1.8.1                                        
periodictable     1.4.1                                        
pexpect           3.3                                          
Pillow            3.2.0                                        
pip               9.0.1                                        
Pmw               2.0.0                                        
pycodestyle       2.0.0                                        
pyflakes          1.2.3                                        
Pygments          2.1.3                                        
pylint            1.4.3                                        
pyparsing         2.0.3                                        
PySide            1.2.2                                        
python-dateutil   2.5.2                                        
pytz              2016.6.1                                     
rpy2              2.5.6                                        
scikit-learn      0.17.1                                       
scipy             0.18.1                                       
setuptools        25.2.0                                       
six               1.10.0                                       
snowballstemmer   1.2.1                                        
Sphinx            1.4.5                                        
sphinx-rtd-theme  0.1.10a0                                     
virtualenv        15.0.1                                       
wheel             0.26.0                                       
wrapt             1.10.8   

TOSS 3 Python Version 3.6.4 Site Packages

The following site packages for Python version 3.6.4 (/usr/tce/packages/python/python-3.6.4/bin/python3) on TOSS 3 systems:

[lee218@rzgenie5:~]$ date
Thu May 10 13:07:16 PDT 2018
[lee218@rzgenie5:~]$ python3-3.6.4 -m pip list --format=columns                       
Package                            Version                                      
---------------------------------- -------                                      
alabaster                          0.7.10                                       
appdirs                            1.4.3                                        
astroid                            1.4.5                                        
Babel                              2.4.0                                        
backports.shutil-get-terminal-size 1.0.0                                        
basemap                            1.0.7                                        
biopython                          1.70                                         
Bottleneck                         1.0.0                                        
configparser                       3.5.0                                        
cycler                             0.10.0                                       
Cython                             0.25.2                                       
dask                               0.8.1                                        
decorator                          4.0.9                                        
docutils                           0.13.1                                       
editdistance                       0.4                                          
enum34                             1.1.6                                        
epydoc                             3.0.1                                        
flake8                             3.5.0                                        
gist                               2.1.7                                        
h5py                               2.7.1                                        
hypothesis                         3.7.0                                        
imagesize                          0.7.1                                        
ipython                            5.1.0                                        
ipython-genutils                   0.1.0                                        
isort                              4.2.15                                       
Jinja2                             2.9.6                                        
Keras                              2.0.3                                        
lazy-object-proxy                  1.3.1                                        
lit                                0.5.0                                        
llvmlite                           0.20.0                                       
MarkupSafe                         1.0                                          
matplotlib                         2.0.2
mccabe                             0.6.1
mpi4py                             3.0.0
mpmath                             0.19
netCDF4                            1.2.7
networkx                           1.11
nose                               1.3.7
numba                              0.35.0
numexpr                            2.6.1
numpy                              1.13.3
packaging                          16.8
pandas                             0.21.1
pathlib2                           2.1.0
periodictable                      1.4.1
pexpect                            4.2.1
pickleshare                        0.7.4
Pillow                             3.2.0
pip                                9.0.1
pkgconfig                          1.2.2
Pmw                                2.0.0
prompt-toolkit                     1.0.9
psutil                             5.0.1
ptyprocess                         0.5.1
py                                 1.4.33
pycodestyle                        2.3.1
pydot                              1.2.3
pyflakes                           1.6.0
Pygments                           2.2.0
pylint                             1.6.5
pyparsing                          2.2.0
PySide                             1.2.2
pytest                             3.0.7
python-dateutil                    2.5.2
pytz                               2017.2
PyYAML                             3.11
requests                           2.14.2
rpy2                               2.5.6
scikit-image                       0.12.3
scikit-learn                       0.19.1
scipy                              1.0.0
setuptools                         35.0.2
simplegeneric                      0.8.1
six                                1.10.0
snowballstemmer                    1.2.1
Sphinx                             1.6.3
sphinx-rtd-theme                   0.2.5b1
sphinxcontrib-websupport           1.0.1
sympy                              1.0
tables                             3.3.0
Theano                             0.8.2
toml                               0.9.3
traitlets                          4.3.1
typing                             3.6.1
virtualenv                         15.1.0
wcwidth                            0.1.7
wheel                              0.29.0
wrapt                              1.10.10

TOSS 3 Python Version 3.7.2 Site Packages

The following site packages for Python version 3.7.2 (/usr/tce/packages/python/python-3.7.2/bin/python3) on TOSS 3 systems

[lee218@rzgenie5:~]$ date
Fri Mar  8 11:48:10 PST 2019
[lee218@rzgenie5:~]$ python3-3.7.2 -m pip list --format=columns
Package                  Version
------------------------ -------
alabaster                0.7.12 
astroid                  2.2.0  
atomicwrites             1.1.5  
attrs                    18.1.0 
Babel                    2.6.0  
basemap                  1.2.0  
biopython                1.73   
Bottleneck               1.2.1  
cffi                     1.12.2 
cloudpickle              0.5.2  
cycler                   0.10.0 
Cython                   0.29.5 
dask                     1.1.2  
decorator                4.3.0  
docutils                 0.14   
editdistance             0.4    
epydoc                   3.0.1  
flake8                   3.7.7  
gist                     2.1.7  
h5py                     2.9.0  
hypothesis               4.7.2  
imagesize                1.1.0  
ipython                  7.3.0  
ipython-genutils         0.2.0  
isort                    4.2.15 
Jinja2                   2.10   
Keras                    2.2.4  
Keras-Applications       1.0.7  
Keras-Preprocessing      1.0.9  
kiwisolver               1.0.1  
lazy-object-proxy        1.3.1  
lit                      0.7.1  
llvmlite                 0.27.1 
locket                   0.2.0  
MarkupSafe               1.0    
matplotlib               3.0.2  
mccabe                   0.6.1  
more-itertools           4.3.0  
mpi4py                   3.0.1  
mpmath                   1.1.0  
netCDF4                  1.4.2  
networkx                 2.2    
nose                     1.3.7  
numba                    0.42.1 
numexpr                  2.6.9  
numpy                    1.16.2 
packaging                17.1   
pandas                   0.24.1 
partd                    0.3.8  
periodictable            1.5.0  
pexpect                  4.6.0  
pickleshare              0.7.4  
Pillow                   5.4.1  
pip                      19.0.3 
pkgconfig                1.4.0  
pluggy                   0.7.1  
Pmw                      2.0.1  
prompt-toolkit           1.0.9  
psutil                   5.5.1  
ptyprocess               0.5.1  
py                       1.5.4  
pycairo                  1.17.1 
pycparser                2.18   
pydot                    1.4.1  
pyflakes                 2.1.0  
Pygments                 2.3.1  
PyGObject                3.28.3 
pylint                   2.3.0  
pyparsing                2.3.1  
pyproj                   1.9.6  
pyshp                    2.1.0  
PySide2                  5.12.1 
pytest                   4.3.0  
python-dateutil          2.5.2  
pytz                     2017.2 
PyWavelets               0.5.2  
PyYAML                   3.13   
requests                 2.21.0 
rpy2                     3.0.0  
scikit-image             0.14.2 
scikit-learn             0.20.2 
scipy                    1.2.1  
setuptools               40.8.0 
setuptools-scm           3.1.0  
shiboken2                5.12.1 
simplegeneric            0.8.1  
six                      1.12.0 
snowballstemmer          1.2.1  
Sphinx                   1.8.4  
sphinx-rtd-theme         0.4.3  
sphinxcontrib-websupport 1.1.0  
sympy                    1.3    
tables                   3.4.4  
Theano                   1.0.4  
toml                     0.10.0 
toolz                    0.9.0  
traitlets                4.3.1  
virtualenv               16.4.1 
wcwidth                  0.1.7  
wheel                    0.33.1 
wrapt                    1.10.10
xdot                     1.0    

TOSS 3 Python Version 3.8.2 Site Packages

The following site packages for Python version 3.8.2 (/usr/tce/packages/python/python-3.8.2/bin/python3) on TOSS 3 systems

[lee218@rzgenie2:~]$ date
Tue Aug 11 10:08:12 PDT 2020
[lee218@rzgenie2:~]$ python3-3.8.2 -m pip list --format=columns
Package                       Version    
----------------------------- -----------
alabaster                     0.7.12     
appdirs                       1.4.3      
asn1crypto                    0.24.0     
astroid                       2.2.0      
atomicwrites                  1.3.0      
attrs                         19.2.0     
Babel                         2.7.0      
backcall                      0.1.0      
bandit                        1.6.2      
basemap                       1.2.0      
biopython                     1.73       
black                         19.3b0     
bokeh                         2.0.2      
boto3                         1.10.44    
botocore                      1.13.44    
Bottleneck                    1.2.1      
cached-property               1.5.1      
Cartopy                       0.18.0     
certifi                       2019.9.11  
cffi                          1.14.0     
cftime                        1.0.3.4    
chardet                       3.0.4      
Click                         7.0        
cloudpickle                   1.2.1      
colorama                      0.4.1      
colorcet                      2.0.2      
coverage                      4.5.4      
cryptography                  2.7        
cycler                        0.10.0     
Cython                        0.29.14    
dask                          1.2.2      
decorator                     4.4.0      
dill                          0.3.1.1    
distributed                   2.10.0     
docutils                      0.15.2     
entrypoints                   0.3        
epydoc                        3.0.1      
flake8                        3.7.8      
future                        0.18.2     
GDAL                          3.0.4      
gist                          2.1.7      
gitdb                         4.0.4      
GitPython                     3.1.1      
gym                           0.17.1     
h5py                          2.10.0     
HeapDict                      1.0.1      
holoviews                     1.13.2     
hypothesis                    4.41.2     
idna                          2.8        
imageio                       2.5.0      
imagesize                     1.1.0      
ipykernel                     5.3.0      
ipython                       7.3.0      
ipython-genutils              0.2.0      
isort                         4.3.20     
Jinja2                        2.10.3     
jmespath                      0.9.4      
joblib                        0.14.0     
jsonschema                    3.0.1      
jupyter-client                6.1.5      
jupyter-core                  4.6.3      
Keras                         2.2.4      
Keras-Applications            1.0.8      
Keras-Preprocessing           1.1.0      
kiwisolver                    1.1.0      
lazy-object-proxy             1.3.1      
lit                           0.7.1      
llvmlite                      0.31.0     
locket                        0.2.0      
Markdown                      3.2.1      
MarkupSafe                    1.1.1      
matplotlib                    3.2.0      
mccabe                        0.6.1      
meson                         0.49.1     
more-itertools                7.2.0      
mpi4py                        3.0.3      
mpmath                        1.1.0      
msgpack                       0.6.2      
mypy                          0.740      
mypy-extensions               0.4.3      
netCDF4                       1.4.2      
networkx                      2.2        
nose                          1.3.7      
numba                         0.48.0     
numexpr                       2.7.0      
numpy                         1.18.1     
OWSLib                        0.17.1     
packaging                     19.2       
pandas                        0.25.1     
panel                         0.9.5      
param                         1.9.3      
partd                         0.3.8      
pbr                           5.4.5      
periodictable                 1.5.0      
pexpect                       4.7.0      
pickleshare                   0.7.5      
Pillow                        7.0.0      
pip                           19.3       
pkgconfig                     1.5.1      
plotly                        2.2.0      
pluggy                        0.13.0     
Pmw                           2.0.1      
prompt-toolkit                2.0.9      
psutil                        5.6.3      
ptyprocess                    0.6.0      
py                            1.8.0      
pybind11                      2.4.3      
pycairo                       1.18.1     
pycodestyle                   2.5.0      
pycparser                     2.19       
pyct                          0.4.6      
pydot                         1.4.1      
pyepsg                        0.3.2      
pyflakes                      2.1.1      
pyglet                        1.5.0      
Pygments                      2.4.2      
PyGObject                     3.28.3     
pylint                        2.3.0      
pyparsing                     2.4.2      
pyproj                        2.2.0      
PyQt5                         5.14.1     
PyQt5-sip                     12.7.1     
pyrsistent                    0.15.7     
pyshp                         2.1.0      
PySide2                       5.14.1     
pytest                        5.2.1      
pytest-runner                 5.1        
python-dateutil               2.8.0      
python-Levenshtein            0.12.0     
pytz                          2019.3     
pyviz-comms                   0.7.4      
PyWavelets                    0.5.2      
PyYAML                        5.1.2      
pyzmq                         19.0.1     
requests                      2.22.0     
rpy2                          3.0.0      
s3transfer                    0.2.1      
scikit-image                  0.14.2     
scikit-learn                  0.22.1     
scipy                         1.4.1      
seaborn                       0.10.1     
setuptools                    41.4.0     
Shapely                       1.6.4.post2
shiboken2                     5.14.1     
simplegeneric                 0.8.1      
six                           1.12.0     
smmap                         3.0.2      
snowballstemmer               2.0.0      
sortedcontainers              2.1.0      
Sphinx                        2.2.0      
sphinx-rtd-theme              0.4.3      
sphinxcontrib-applehelp       1.0.1      
sphinxcontrib-devhelp         1.0.1      
sphinxcontrib-htmlhelp        1.0.2      
sphinxcontrib-jsmath          1.0.1      
sphinxcontrib-programoutput   0.15       
sphinxcontrib-qthelp          1.0.2      
sphinxcontrib-serializinghtml 1.1.3      
stevedore                     1.32.0     
sympy                         1.4        
tblib                         1.4.0      
Theano                        1.0.4      
toml                          0.10.0     
toolz                         0.9.0      
tornado                       6.0.3      
tqdm                          4.45.0     
traitlets                     4.3.3      
typed-ast                     1.4.0      
typing-extensions             3.7.4      
urllib3                       1.25.6     
virtualenv                    16.7.6     
wcwidth                       0.1.7      
wheel                         0.33.4     
wrapt                         1.11.2     
xdot                          1.0        
xlrd                          1.2.0      
zict                          1.0.0  

CORAL EA and CORAL Python Version 2.7.13 Site Packages

The following site packages for Python version 2.7.13 (/usr/tcetmp/packages/python/python-2.7.13/bin/python) on CORAL EA and CORAL systems:

[lee218@rzmanta23:~]$ date
Fri Feb 16 08:19:52 PST 2018
[lee218@rzmanta23:~]$ python-2.7.13 -m pip list --format=columns
Package                            Version                      
---------------------------------- -----------                  
alabaster                          0.7.10                       
appdirs                            1.4.3                        
astroid                            1.4.5                        
Babel                              2.4.0                        
backports.shutil-get-terminal-size 1.0.0                        
biopython                          1.65                         
Bottleneck                         1.0.0                        
configparser                       3.5.0                        
cycler                             0.10.0                       
dask                               0.8.1                        
decorator                          4.0.9                        
docutils                           0.13.1                       
egenix-mx-base                     3.2.8                        
enum34                             1.1.6                        
epydoc                             3.0.1                        
flake8                             3.0.4                        
functools32                        3.2.3.post2                  
h5py                               2.6.0                        
imagesize                          0.7.1                        
ipython                            5.1.0                        
ipython-genutils                   0.1.0                        
Jinja2                             2.9.6                        
logilab-common                     1.2.0                        
MarkupSafe                         1.0                          
matplotlib                         2.0.2                        
mccabe                             0.5.2                        
mpi4py                             2.0.0                        
networkx                           1.11                         
numexpr                            2.6.1                        
numpy                              1.12.1                       
packaging                          16.8                         
pandas                             0.19.0                       
pathlib2                           2.1.0                        
pexpect                            4.2.1                        
pickleshare                        0.7.4                        
Pillow                             3.2.0                        
pip                                9.0.1                        
prompt-toolkit                     1.0.9                        
protobuf                           3.0.0b2                      
psutil                             5.0.1                        
ptyprocess                         0.5.1                        
pycodestyle                        2.0.0                        
pyflakes                           1.2.3                        
Pygments                           2.2.0                        
pylint                             1.4.3                        
pyparsing                          2.2.0                        
PySide                             1.2.2                        
python-dateutil                    2.5.2                        
pytz                               2017.2                       
PyYAML                             3.11                         
requests                           2.14.2                       
rpy2                               2.5.6                        
scikit-image                       0.12.3                       
scikit-learn                       0.18.1                       
scipy                              0.19.0                       
setuptools                         35.0.2                       
simplegeneric                      0.8.1                        
six                                1.10.0                       
snowballstemmer                    1.2.1                        
Sphinx                             1.6.1                        
sphinx-rtd-theme                   0.2.5b1                      
sphinxcontrib-websupport           1.0.1                        
subprocess32                       3.2.7                        
traitlets                          4.3.1                        
typing                             3.6.1                        
virtualenv                         15.1.0                       
wcwidth                            0.1.7 

CORAL EA and CORAL Python Version 2.7.14 Site Packages

The following site packages for Python version 2.7.14 (/usr/tcetmp/packages/python/python-2.7.14/bin/python) on CORAL EA and CORAL systems:

[lee218@rzmanta23:~]$ date                                                      
Thu May 10 13:13:44 PDT 2018                                                    
[lee218@rzmanta23:~]$ python-2.7.14 -m pip list --format=columns                       
Package                            Version                                      
---------------------------------- -----------                                  
alabaster                          0.7.10                                       
appdirs                            1.4.3                                        
astroid                            1.4.5                                        
Babel                              2.4.0                                        
backports.shutil-get-terminal-size 1.0.0                                        
basemap                            1.0.7                                        
biopython                          1.70                                         
Bottleneck                         1.0.0                                        
cffi                               1.11.5                                       
configparser                       3.5.0                                        
cycler                             0.10.0                                       
Cython                             0.25.2                                       
dask                               0.8.1                                        
decorator                          4.0.9                                        
docutils                           0.13.1                                       
egenix-mx-base                     3.2.8                                        
enum34                             1.1.6                                        
epydoc                             3.0.1                                        
flake8                             3.5.0                                        
funcsigs                           0.4                                          
functools32                        3.2.3.post2                                  
gnuplot-py                         1.8                                          
h5py                               2.7.1                                        
hypothesis                         3.7.0                                        
imagesize                          0.7.1                                        
ipython                            5.1.0                                        
ipython-genutils                   0.1.0                                        
Jinja2                             2.9.6                                        
Keras                              2.0.3                                        
lit                                0.5.0                                        
llvmlite                           0.20.0                                       
MarkupSafe                         1.0                                          
matplotlib                         2.0.2                                        
mccabe                             0.6.1
mpi4py                             3.0.0
mpmath                             0.19
netCDF4                            1.2.7
networkx                           1.11
nose                               1.3.7
numba                              0.35.0
numexpr                            2.6.1
numpy                              1.13.3
packaging                          16.8
pandas                             0.21.1
pathlib2                           2.1.0
periodictable                      1.4.1
pexpect                            4.2.1
pickleshare                        0.7.4
Pillow                             3.2.0
pip                                9.0.1
Pmw                                2.0.0
prompt-toolkit                     1.0.9
psutil                             5.0.1
ptyprocess                         0.5.1
py                                 1.4.33
pychecker                          0.8.19
pycodestyle                        2.3.1
pycparser                          2.17
pydot                              1.2.3
pyflakes                           1.6.0
Pygments                           2.2.0
pylint                             1.6.5
pyparsing                          2.2.0
PySide                             1.2.2
pytest                             3.0.7
python-dateutil                    2.5.2
pytz                               2017.2
PyYAML                             3.11
requests                           2.14.2
rpy2                               2.5.6
ScientificPython                   2.8.1
scikit-image                       0.12.3
scikit-learn                       0.18.1
scipy                              1.0.0
setuptools                         35.0.2
simplegeneric                      0.8.1
singledispatch                     3.4.0.3
six                                1.10.0
snowballstemmer                    1.2.1
Sphinx                             1.6.3
sphinx-rtd-theme                   0.2.5b1
sphinxcontrib-websupport           1.0.1
subprocess32                       3.2.7
sympy                              1.0
Theano                             0.8.2
traitlets                          4.3.1
typing                             3.6.1
virtualenv                         15.1.0
wcwidth                            0.1.7
wheel                              0.29.0

CORAL EA and CORAL Python Version 2.7.16 Site Packages

The following site packages for Python version 2.7.16 (/usr/tcetmp/packages/python/python-2.7.16/bin/python) on CORAL EA and CORAL systems:

[lee218@rzansel61:~]$ date
Fri Mar  8 11:48:34 PST 2019
[lee218@rzansel61:~]$ python-2.7.16 -m pip list --format=columns
Package                            Version   
---------------------------------- -----------
alabaster                          0.7.12    
astroid                            2.2.0     
atomicwrites                       1.1.5     
attrs                              18.1.0    
Babel                              2.6.0     
backports.shutil-get-terminal-size 1.0.0     
biopython                          1.73      
Bottleneck                         1.2.1     
cffi                               1.12.2    
cloudpickle                        0.5.2     
configparser                       3.5.1     
cycler                             0.10.0    
Cython                             0.29.5    
dask                               1.1.2     
decorator                          4.3.0     
docutils                           0.14      
editdistance                       0.4       
enum34                             1.1.6     
epydoc                             3.0.1     
flake8                             3.7.7     
funcsigs                           1.0.2     
functools32                        3.2.3.post2
gnuplot-py                         1.8       
h5py                               2.9.0     
hypothesis                         4.7.2     
imagesize                          1.1.0     
ipython                            5.1.0     
ipython-genutils                   0.2.0     
isort                              4.2.15    
Jinja2                             2.10      
Keras                              2.2.4     
Keras-Applications                 1.0.7     
Keras-Preprocessing                1.0.9     
kiwisolver                         1.0.1     
lazy-object-proxy                  1.3.1     
lit                                0.7.1     
locket                             0.2.0     
MarkupSafe                         1.0       
matplotlib                         2.2.3     
mccabe                             0.6.1     
more-itertools                     4.3.0     
mpi4py                             3.0.1     
mpmath                             1.1.0     
netCDF4                            1.4.2     
networkx                           2.2       
nose                               1.3.7     
numexpr                            2.6.9     
numpy                              1.16.2    
packaging                          17.1      
pandas                             0.24.1    
partd                              0.3.8     
pathlib2                           2.3.2     
periodictable                      1.5.0     
pexpect                            4.6.0     
pickleshare                        0.7.4     
Pillow                             5.4.1     
pip                                19.0.3    
pkgconfig                          1.4.0     
pluggy                             0.7.1     
Pmw                                2.0.1     
prompt-toolkit                     1.0.9     
psutil                             5.5.1     
ptyprocess                         0.5.1     
py                                 1.5.4     
pychecker                          0.8.19    
pycparser                          2.18      
pydot                              1.4.1     
pyflakes                           2.1.0     
Pygments                           2.3.1     
pylint                             2.3.0     
Pypar                              2.1.5     
pyparsing                          2.3.1     
pytest                             4.3.0     
python-dateutil                    2.5.2     
pytz                               2017.2    
PyYAML                             3.13      
requests                           2.21.0    
rpy2                               2.8.6     
scandir                            1.9.0     
ScientificPython                   2.8.1     
scikit-image                       0.14.2    
scikit-learn                       0.20.2    
scipy                              1.2.1     
setuptools                         40.8.0    
setuptools-scm                     3.1.0     
simplegeneric                      0.8.1     
singledispatch                     3.4.0.3   
six                                1.12.0    
snowballstemmer                    1.2.1     
Sphinx                             1.8.4     
sphinx-rtd-theme                   0.4.3     
sphinxcontrib-websupport           1.1.0     
subprocess32                       3.2.7     
sympy                              1.3       
Theano                             1.0.4     
toml                               0.10.0    
toolz                              0.9.0     
traitlets                          4.3.1     
typing                             3.6.1     
virtualenv                         16.4.1    
wcwidth                            0.1.7     
wheel                              0.33.1    
wrapt                              1.10.10

CORAL EA and CORAL Python Version 3.6.4 Site Packages

The following site packages for Python version 3.6.4 (/usr/tcetmp/packages/python/python-3.6.4/bin/python3) on CORAL EA and CORAL systems:

[lee218@rzmanta23:~]$ date
Thu May 10 13:14:42 PDT 2018
[lee218@rzmanta23:~]$ python3-3.6.4 -m pip list --format=columns
Package                            Version               
---------------------------------- -------               
alabaster                          0.7.10                
appdirs                            1.4.3                 
astroid                            1.4.5                 
Babel                              2.4.0                 
backports.shutil-get-terminal-size 1.0.0                 
biopython                          1.70                  
Bottleneck                         1.0.0                 
cffi                               1.11.5                
configparser                       3.5.0                 
cycler                             0.10.0                
Cython                             0.25.2                
dask                               0.8.1                 
decorator                          4.0.9                 
docutils                           0.13.1                
enum34                             1.1.6                 
epydoc                             3.0.1                 
flake8                             3.5.0                 
h5py                               2.7.1                 
hypothesis                         3.7.0                 
imagesize                          0.7.1                 
ipython                            5.1.0                 
ipython-genutils                   0.1.0                 
Jinja2                             2.9.6                 
Keras                              2.0.3                 
lit                                0.5.0
llvmlite                           0.20.0
MarkupSafe                         1.0
matplotlib                         2.0.2
mccabe                             0.6.1
mpi4py                             3.0.0
mpmath                             0.19
netCDF4                            1.2.7
networkx                           1.11
nose                               1.3.7
numba                              0.35.0
numexpr                            2.6.1
numpy                              1.13.3
packaging                          16.8
pandas                             0.21.1
pathlib2                           2.1.0
periodictable                      1.4.1
pexpect                            4.2.1
pickleshare                        0.7.4
Pillow                             3.2.0
pip                                9.0.1
Pmw                                2.0.0
prompt-toolkit                     1.0.9
psutil                             5.0.1
ptyprocess                         0.5.1
py                                 1.4.33
pycodestyle                        2.3.1
pycparser                          2.17
pydot                              1.2.3
pyflakes                           1.6.0
Pygments                           2.2.0
pylint                             1.6.5
pyparsing                          2.2.0
PySide                             1.2.2
pytest                             3.0.7
python-dateutil                    2.5.2
pytz                               2017.2
PyYAML                             3.11
requests                           2.14.2
rpy2                               2.5.6
scikit-image                       0.12.3
scikit-learn                       0.18.1
scipy                              1.0.0
setuptools                         35.0.2
simplegeneric                      0.8.1
six                                1.10.0
snowballstemmer                    1.2.1
Sphinx                             1.6.3
sphinx-rtd-theme                   0.2.5b1
sphinxcontrib-websupport           1.0.1
sympy                              1.0
Theano                             0.8.2
traitlets                          4.3.1
typing                             3.6.1
virtualenv                         15.1.0
wcwidth                            0.1.7
wheel                              0.29.0

CORAL EA and CORAL Python Version 3.7.2 Site Packages

The following site packages for Python version 3.7.2 (/usr/tcetmp/packages/python/python-3.7.2/bin/python3) on CORAL EA and CORAL systems:

[lee218@rzansel61:~]$ date
Fri Mar  8 11:48:52 PST 2019
[lee218@rzansel61:~]$ python3-3.7.2 -m pip list --format=columns
Package                  Version
------------------------ -------
alabaster                0.7.12
astroid                  2.2.0 
atomicwrites             1.1.5 
attrs                    18.1.0
Babel                    2.6.0 
biopython                1.73  
Bottleneck               1.2.1 
cffi                     1.12.2
cloudpickle              0.5.2 
cycler                   0.10.0
Cython                   0.29.5
dask                     1.1.2 
decorator                4.3.0 
docutils                 0.14  
editdistance             0.4   
epydoc                   3.0.1 
flake8                   3.7.7 
h5py                     2.9.0 
hypothesis               4.7.2 
imagesize                1.1.0 
ipython                  7.3.0 
ipython-genutils         0.2.0 
isort                    4.2.15
Jinja2                   2.10  
Keras                    2.2.4 
Keras-Applications       1.0.7 
Keras-Preprocessing      1.0.9 
kiwisolver               1.0.1 
lazy-object-proxy        1.3.1 
lit                      0.7.1 
locket                   0.2.0 
MarkupSafe               1.0   
matplotlib               3.0.2 
mccabe                   0.6.1 
more-itertools           4.3.0 
mpi4py                   3.0.1 
mpmath                   1.1.0 
netCDF4                  1.4.2 
networkx                 2.2   
nose                     1.3.7 
numexpr                  2.6.9 
numpy                    1.16.2
packaging                17.1  
pandas                   0.24.1
partd                    0.3.8 
periodictable            1.5.0 
pexpect                  4.6.0 
pickleshare              0.7.4 
Pillow                   5.4.1 
pip                      19.0.3
pkgconfig                1.4.0 
pluggy                   0.7.1 
Pmw                      2.0.1 
prompt-toolkit           1.0.9 
psutil                   5.5.1 
ptyprocess               0.5.1 
py                       1.5.4 
pycairo                  1.17.1
pycparser                2.18  
pydot                    1.4.1 
pyflakes                 2.1.0 
Pygments                 2.3.1 
PyGObject                3.28.3
pylint                   2.3.0 
pyparsing                2.3.1 
pytest                   4.3.0 
python-dateutil          2.5.2 
pytz                     2017.2
PyYAML                   3.13  
requests                 2.21.0
rpy2                     3.0.0 
scikit-image             0.14.2
scikit-learn             0.20.2
scipy                    1.2.1 
setuptools               40.8.0
setuptools-scm           3.1.0 
simplegeneric            0.8.1 
six                      1.12.0
snowballstemmer          1.2.1 
Sphinx                   1.8.4 
sphinx-rtd-theme         0.4.3 
sphinxcontrib-websupport 1.1.0 
sympy                    1.3   
tables                   3.4.4 
Theano                   1.0.4 
toml                     0.10.0
toolz                    0.9.0 
traitlets                4.3.1 
virtualenv               16.4.1
wcwidth                  0.1.7 
wheel                    0.33.1
wrapt                    1.10.10
xdot                     1.0

CORAL EA and CORAL Python Version 3.8.2 Site Packages

The following site packages for Python version 3.8.2 (/usr/tcetmp/packages/python/python-3.8.2/bin/python3) on CORAL EA and CORAL systems:

[lee218@rzansel61:~]$ date
Tue Aug 11 10:23:07 PDT 2020
[lee218@rzansel61:~]$ python3-3.8.2 -m pip list --format=columns
Package                       Version    
----------------------------- -----------
alabaster                     0.7.12     
appdirs                       1.4.3      
asn1crypto                    0.24.0     
astroid                       2.2.0      
atomicwrites                  1.3.0      
attrs                         19.2.0     
Babel                         2.7.0      
backcall                      0.2.0      
bandit                        1.6.2      
basemap                       1.2.0      
biopython                     1.73       
black                         19.3b0     
bokeh                         2.0.2      
boto3                         1.10.44    
botocore                      1.13.44    
Bottleneck                    1.2.1      
cached-property               1.5.1      
Cartopy                       0.18.0     
certifi                       2019.9.11  
cffi                          1.14.0     
cftime                        1.0.3.4    
chardet                       3.0.4      
Click                         7.0        
cloudpickle                   1.2.1      
colorama                      0.4.1      
colorcet                      2.0.2      
coverage                      4.5.4      
cryptography                  2.7        
cycler                        0.10.0     
Cython                        0.29.14    
dask                          1.2.2      
decorator                     4.4.0      
dill                          0.3.1.1    
distributed                   2.10.0     
docutils                      0.15.2     
entrypoints                   0.3        
epydoc                        3.0.1      
flake8                        3.7.8      
future                        0.18.2     
GDAL                          3.0.4      
gist                          2.1.7      
gitdb                         4.0.4      
GitPython                     3.1.1      
gym                           0.17.1     
h5py                          2.10.0     
HeapDict                      1.0.1      
holoviews                     1.13.2     
hypothesis                    4.41.2     
idna                          2.8        
imageio                       2.5.0      
imagesize                     1.1.0      
ipykernel                     5.3.0      
ipython                       7.16.1     
ipython-genutils              0.2.0      
isort                         4.3.20     
jedi                          0.17.1     
Jinja2                        2.10.3     
jmespath                      0.9.4      
joblib                        0.14.0     
jsonschema                    3.0.1      
jupyter-client                6.1.5      
jupyter-core                  4.6.3      
Keras                         2.2.4      
Keras-Applications            1.0.8      
Keras-Preprocessing           1.1.0      
kiwisolver                    1.1.0      
lazy-object-proxy             1.3.1      
lit                           0.7.1      
locket                        0.2.0      
Markdown                      3.2.1      
MarkupSafe                    1.1.1      
matplotlib                    3.2.1      
mccabe                        0.6.1      
meson                         0.49.1     
more-itertools                7.2.0      
mpi4py                        3.0.3      
mpmath                        1.1.0      
msgpack                       0.6.2      
mypy                          0.740      
mypy-extensions               0.4.3      
netCDF4                       1.4.2      
networkx                      2.2        
nose                          1.3.7      
numexpr                       2.7.0      
numpy                         1.18.2     
OWSLib                        0.17.1     
packaging                     19.2       
pandas                        0.25.1     
panel                         0.9.5      
param                         1.9.3      
parso                         0.7.0      
partd                         0.3.8      
pbr                           5.4.5      
periodictable                 1.5.0      
pexpect                       4.8.0      
pickleshare                   0.7.5      
Pillow                        7.0.0      
pip                           19.3       
pkgconfig                     1.5.1      
plotly                        2.2.0      
pluggy                        0.13.0     
Pmw                           2.0.1      
prompt-toolkit                3.0.5      
psutil                        5.6.3      
ptyprocess                    0.6.0      
py                            1.8.0      
pybind11                      2.4.3      
pycairo                       1.18.1     
pycodestyle                   2.5.0      
pycparser                     2.19       
pyct                          0.4.6      
pydot                         1.4.1      
pyepsg                        0.3.2      
pyflakes                      2.1.1      
pyglet                        1.5.0      
Pygments                      2.4.2      
PyGObject                     3.28.3     
pylint                        2.3.0      
pyparsing                     2.4.2      
pyproj                        2.2.0      
pyrsistent                    0.15.7     
pyshp                         2.1.0      
pytest                        5.2.1      
pytest-runner                 5.1        
python-dateutil               2.8.0      
python-Levenshtein            0.12.0     
pytz                          2019.3     
pyviz-comms                   0.7.4      
PyWavelets                    0.5.2      
PyYAML                        5.1.2      
pyzmq                         19.0.1     
requests                      2.22.0     
rpy2                          3.0.0      
s3transfer                    0.2.1      
scikit-image                  0.14.2     
scikit-learn                  0.22.1     
scipy                         1.4.1      
seaborn                       0.10.1     
setuptools                    41.4.0     
Shapely                       1.6.4.post2
six                           1.12.0     
smmap                         3.0.2      
snowballstemmer               2.0.0      
sortedcontainers              2.1.0      
Sphinx                        2.2.0      
sphinx-rtd-theme              0.4.3      
sphinxcontrib-applehelp       1.0.1      
sphinxcontrib-devhelp         1.0.1      
sphinxcontrib-htmlhelp        1.0.2      
sphinxcontrib-jsmath          1.0.1      
sphinxcontrib-programoutput   0.15       
sphinxcontrib-qthelp          1.0.2      
sphinxcontrib-serializinghtml 1.1.3      
stevedore                     1.32.0     
sympy                         1.4        
tblib                         1.4.0      
Theano                        1.0.4      
toml                          0.10.0     
toolz                         0.9.0      
tornado                       6.0.3      
tqdm                          4.45.0     
traitlets                     4.3.3      
typed-ast                     1.4.0      
typing-extensions             3.7.4      
urllib3                       1.25.6     
virtualenv                    16.7.6     
wcwidth                       0.1.7      
wheel                         0.33.4     
wrapt                         1.11.2     
xdot                          1.0        
xlrd                          1.2.0      
zict                          1.0.0
UCRL-WEB-150152