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From offsite: (925) 422-4531

 

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Python Site Packages

Site Packages

For each Python version, LC supports a set of modules, also known as site-packages, generally beneficial to our user community. Our package selection process begins when a package is requested by a user. LC first studies if it can generally benefit the Python users on the LC machines before committing to install and maintain it. If it turns out to be too specific to the individual requester, we recommend that this user make a side-installation and add the installation path to their Python module search path via the PYTHONPATH environment variable, or that the user use virtualenv to manage their own Python environment (instructions for both options here). In general, a python installation can be queried for the list of packages by running python -m pip list --format=columns. The information below is for TOSS 3 and CORAL EA systems. Information for CHAOS 5 installations is available here.

TOSS 3 Python Version 2.7.13 Site Packages

The following site packages for Python version 2.7.13 (/usr/tce/packages/python/python-2.7.13/bin/python) on TOSS 3 systems:

[lee218@rzgenie2:~]$ date
Tue Jul 25 15:20:03 PDT 2017
[lee218@rzgenie2:~]$ python -m pip list --format=columns
Package           Version                              
----------------- --------                             
alabaster         0.7.9                                
astroid           1.4.5                                
Babel             2.3.4                                
basemap           1.0.7                                
biopython         1.65                                 
Bottleneck        1.0.0                                
configparser      3.5.0                                
cycler            0.10.0                               
Cython            0.25.2                               
docutils          0.12                                 
egenix-mx-base    3.2.8                                
enum34            1.1.6                                
epydoc            3.0.1                                
flake8            3.0.4                                
funcsigs          0.4                                  
gist              2.1.7                                
gnuplot-py        1.8                                  
h5py              2.6.0                                
imagesize         0.7.1                                
ipython           3.1.0                                
Jinja2            2.8                                  
lazy-object-proxy 1.2.2                                
llvmlite          0.18.0                               
logilab-common    1.2.0                                
MarkupSafe        0.23                                 
matplotlib        1.5.3                                
mccabe            0.5.2                                
mock              1.3.0                                
mpi4py            2.0.0                                
mpmath            0.19                                 
netCDF4           1.2.3.1                              
nose              1.3.7                                
numba             0.33.0                               
numexpr           2.5                                  
numpy             1.11.2                               
pandas            0.18.0                               
pbr               1.8.1                                
periodictable     1.4.1                                
pexpect           3.3                                  
Pillow            3.2.0                                
pip               9.0.1                                
Pmw               2.0.0                                
psutil            5.0.1                                
py                1.4.31                               
pychecker         0.8.19                               
pycodestyle       2.0.0                                
pyflakes          1.2.3                                
Pygments          2.1.3                                
pylint            1.4.3                                
Pypar             2.1.5                                
pyparsing         2.0.3                                
PySide            1.2.2                                
pytest            3.0.2                                
python-dateutil   2.5.2                                
pytz              2016.6.1                             
PyYAML            3.11                                 
requests          2.13.0                               
rpy2              2.5.6                                
ScientificPython  2.8.1                                
scikit-learn      0.17.1                               
scipy             0.18.1                               
setuptools        25.2.0                               
singledispatch    3.4.0.3                              
six               1.10.0                               
snowballstemmer   1.2.1                                
Sphinx            1.4.5
sphinx-rtd-theme  0.1.10a0
sympy             1.0
virtualenv        15.0.1
wheel             0.26.0
wrapt             1.10.8

TOSS 3 Python Version 3.6.0 Site Packages

The following site packages for Python version 3.6.0 (/usr/tce/packages/python/python-3.6.0/bin/python3) on TOSS 3 systems:

[lee218@rzgenie2:~]$ date
Tue Jul 25 15:20:03 PDT 2017
[lee218@rzgenie2:~]$ python3 -m pip list --format=columns
Package           Version
----------------- --------
alabaster         0.7.9
astroid           1.4.5
Babel             2.3.4
basemap           1.0.7
Bottleneck        1.0.0
cycler            0.10.0
Cython            0.25.2
docutils          0.12
epydoc            3.0.1
flake8            3.0.4
gist              2.1.7
h5py              2.6.0
imagesize         0.7.1
ipython           3.1.0
Jinja2            2.8
lazy-object-proxy 1.2.2
logilab-common    1.2.0
MarkupSafe        0.23
matplotlib        1.5.3
mccabe            0.5.2
mock              1.3.0
mpi4py            2.0.0
nose              1.3.7
numexpr           2.5
numpy             1.11.2
pandas            0.18.0
pbr               1.8.1
periodictable     1.4.1
pexpect           3.3
Pillow            3.2.0
pip               9.0.1
Pmw               2.0.0
pycodestyle       2.0.0
pyflakes          1.2.3
Pygments          2.1.3
pylint            1.4.3
pyparsing         2.0.3
PySide            1.2.2
python-dateutil   2.5.2
pytz              2016.6.1
rpy2              2.5.6
scipy             0.18.1
setuptools        25.2.0
six               1.10.0
snowballstemmer   1.2.1
Sphinx            1.4.5
sphinx-rtd-theme  0.1.10a0
virtualenv        15.0.1
wheel             0.26.0
wrapt             1.10.8

CORAL EA Python Version 2.7.13 Site Packages

The following site packages for Python version 2.7.13 (/usr/apps/python/python-2.7.13/bin/python) on CORAL EA systems:

Tue Jul 25 15:56:02 PDT 2017
[lee218@rzmanta23:~]$ /usr/apps/python-2.7.13/bin/python -m pip list --format=columns
Package                            Version
---------------------------------- -----------
appdirs                            1.4.3
backports.shutil-get-terminal-size 1.0.0
biopython                          1.65
Bottleneck                         1.0.0
cycler                             0.10.0
dask                               0.8.1
decorator                          4.0.9
egenix-mx-base                     3.2.8
enum34                             1.1.6
functools32                        3.2.3.post2
h5py                               2.6.0
ipython                            5.1.0
ipython-genutils                   0.1.0
matplotlib                         2.0.2
mpi4py                             2.0.0
networkx                           1.11
numexpr                            2.6.1
numpy                              1.12.1
packaging                          16.8
pandas                             0.19.0
pathlib2                           2.1.0
pexpect                            4.2.1
pickleshare                        0.7.4
Pillow                             3.2.0
pip                                9.0.1
prompt-toolkit                     1.0.9
protobuf                           3.0.0b2
ptyprocess                         0.5.1
Pygments                           2.2.0
pyparsing                          2.2.0
python-dateutil                    2.5.2
pytz                               2017.2
scikit-image                       0.12.3
scipy                              0.19.0
setuptools                         35.0.2
simplegeneric                      0.8.1
six                                1.10.0
subprocess32                       3.2.7
traitlets                          4.3.1
virtualenv                         15.1.0
wcwidth                            0.1.7
UCRL-WEB-150152